Github bwa-mem2
WebWhen to use BWA-MEME. Anyone who use BWA-MEM or BWA-MEM2 in CPU-only machine (BWA-MEME requires 38GB of memory for index at minimal mode) Building … WebJul 2, 2024 · Memory requirements · Issue #64 · bwa-mem2/bwa-mem2 · GitHub bwa-mem2 bwa-mem2 Notifications Fork Star Pull requests Actions Insights New issue Memory requirements #64 Closed zamaudio opened this issue on Jul 2, 2024 · 1 comment Contributor sanchit-misra closed this as completed on Jul 14, 2024 Sign up for free to …
Github bwa-mem2
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WebMay 11, 2024 · Ending indexing with "Killed" is not very fulfilling #196. Ending indexing with "Killed" is not very fulfilling. #196. Closed. bgold04 opened this issue on May 11, 2024 · 4 … WebJul 10, 2024 · $ ./bwa-mem2.sse41 Usage: bwa-mem2 Commands: index create index mem alignment version print version number $ ./bwa …
WebGitHub - xie186/bwa-mem2-meth: fast and accurate alignment of BS-Seq reads using bwa-mem2. xie186 / bwa-mem2-meth Public. forked from brentp/bwa-meth. master. 1 … WebMay 29, 2024 · bwa-mem2 / bwa-mem2 Public Notifications Fork 76 Star 592 Code Issues 61 Pull requests 6 Actions Security Insights New issue The avx512bw binary from the ert branch core dumps #148 Open KBT59 opened this issue on May 29, 2024 · 12 comments KBT59 commented on May 29, 2024 I compiled ert branch bwa-mem2 using Intel oneAPI.
WebJul 5, 2024 · The text was updated successfully, but these errors were encountered: WebNov 25, 2024 · bwa-mem2 / bwa-mem2 Public Notifications Fork 80 Star 600 Code Issues 63 Pull requests 4 Actions Security Insights New issue Ref index preload #120 Closed slw287r opened this issue on Nov 25, 2024 · 7 comments slw287r commented on Nov 25, 2024 closed this as completed Sign up for free to join this conversation on GitHub . …
WebJan 4, 2024 · pre-information is below computer spec = Ubuntu, 80core, 760GB ram bwa version = 2.0pre1 testfiles = 1.7G, 1.7G (paired) Ref genome = GRCh38 cmd doesn't …
WebOct 16, 2024 · I'm trying to reproduce a pipeline previously written in our lab and there seems to be a discrepancy in the output which I've traced back to a bwa-mem/bwa-mem2 difference (I think I've ruled out samtools version differences). I'm using a docker container which is pulling the latest version of bwa-mem2 and samtools v1.5 I created to match … humane society bartlesville okWebIt seems that bwa-mem2 is completely unusable on the Ryzen 5000 series #199 opened on May 19, 2024 by lokapal 1 bwa-mem2 can't create index #198 opened on May 19, 2024 by lokapal 3 Assertion `a.cigar != NULL' … humane society battle creek miWebMay 11, 2024 · bwa-mem2 / bwa-mem2 Public Notifications Fork 75 Star 589 Code Issues Pull requests Actions Security Insights New issue Ending indexing with "Killed" is not very fulfilling #196 Closed bgold04 opened this issue on May 11, 2024 · 4 comments bgold04 on May 11, 2024 to join this conversation on GitHub . Already have an account? Assignees humane society baseline ocala flWebSep 18, 2024 · bwa-mem2 / bwa-mem2 Public Notifications Fork 79 Star 597 Pull requests Security Insights New issue ERROR! Unable to open the file: 2.bwt.8bit.32 #18 Closed ghost opened this issue on Sep 18, 2024 · 2 comments ghost on Sep 18, 2024 edited by ghost ghost completed Labels holi theme for babyWebWhen running bwa-mem2 multiple times using the same input, there is a small but random probability that the alignment output is different. E.g., out of 1000 runs with the same … humane society bath nyWebOct 12, 2024 · bwa shm mode requirement · Issue #103 · bwa-mem2/bwa-mem2 · GitHub We highly appreciate this project, and have a new feature request about shared memory mode for batch process multiple dataset on HPC. Would you guys please consider add this feature to bwa-mem2? humane society bay countyWebMay 19, 2024 · bwa-mem2 version 2.2.1 taken as binaries from github. I recompiled bwa-mem2 2.2.1 with clang++-13 and gcc++-7 - the same result(s). It seems that bwa-mem2 … humane society bartholomew county